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💡 Description
An MCP server for scRNA-Seq analysis using natural language, facilitating data processing, visualization, and analysis tasks without programming knowledge.
📝 JSON Entries
{
"mcpServers": [
{
"scmcp": {
"args": [
"run"
],
"command": "scmcp"
}
}
]
}🛠️ Tools
scmcpscanpy
⚡ Features
- Data reading and writing for scRNA-Seq using natural language
- Pre-processing methods including filtering, quality control, normalization
- Clustering and differential expression analysis
- Plotting modules for visualizations like violin plots and heatmaps
- Cell-cell communication analysis
💬 Example Queries
- Perform a scRNA-Seq analysis.
- Generate visualizations for my cell clusters.